Garrido-Sanz D, Čaušević S, Vacheron J, Heiman CM, Sentchilo V, van der Meer JR, Keel C. 2023. Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere. Microbiome, 11(1):214. DOI: 10.1186/s40168-023-01660-5 

Burz SD, Causevic S, Dal Co A, Dmitrijeva M, Engel P, Garrido-Sanz D, Greub G, Hapfelmeier S, Hardt WD, Hatzimanikatis V, Heiman CM, Herzog MKM, Hockenberry A, Keel C, Keppler A, Lee SJ, Luneau J, Malfertheiner L, Mitri S, Ngyuen B, Oftadeh O, Pacheco AR, Peaudecerf F, Resch G, Ruscheweyh HJ, Sahin A, Sanders IR, Slack E, Sunagawa S, Tackmann J, Tecon R, Ugolini GS, Vacheron J, van der Meer JR, Vayena E, Vonaesch P, Vorholt JA. 2023. From microbiome composition to functional engineering, one step at a time. Microbiology and Molecular Biology Reviews, 87(4):e00063-23. DOI: 10.1128/mmbr.00063-23 

Garrido-Sanz D, Vesga P, Heiman CM, Altenried A, Keel C, Vacheron J. 2023. Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens. The ISME Journal, 17(9): 1369-1381. DOI: 10.1038/s41396-023-01451-8 

Vacheron J, Heiman CM, Garneau JR, Kupferschmied P, de Jonge R, Garrido-Sanz D, Keel C. 2023 Molecular and evolutionary basis of O-antigenic polysaccharide-driven phage sensitivity in environmental pseudomonads. Microbiology spectrum, 11(6):e02049-23. DOI: 10.1128/spectrum.02049-23 

Durán D, Vazquez-Arias D, Blanco-Romero E, Garrido-Sanz D, Redondo-Nieto M, Rivilla R, Martín M. 2023. An orphan VrgG auxiliary module related to the type VI secretion systems from Pseudomonas ogarae F113 mediates bacterial killing. Genes, 4(11):1979. DOI: 10.3390/genes14111979 

Blanco-Romero E, Durán D, Garrido-Sanz D, Redondo-Nieto M, Martín M, Rivilla R. 2023. Adaption of Pseudomonas ogarae F113 to the rhizosphere environment—The amrZ-FleQ hub. Microorganisms, 11(4):1037. DOI: 10.3390/microorganisms11041037 

Martínez-Cuesta R, Conlon R, Wang M, Blanco-Romero E, Durán D, Redondo-Nieto M, Dowling D, Garrido-Sanz D, Martin M, Germaine K, Rivilla R. 2023. Field scale biodegradation of total petroleum hydrocarbons and soil restoration by Ecopiles: microbiological analysis of the process. Frontiers in Microbiology, 14:1158130. DOI: 10.3389/fmicb.2023.1158130 

Garrido-Sanz D, Redondo-Nieto M, Martin M, Rivilla R. 2021. Comparative genomics of the Pseudomonas corrugata subgroup reveals high species diversity and allows the description of Pseudomonas ogarae sp. nov. Microbial genomics, 7(6):000593. DOI: 10.1099/mgen.0.000593 

Wang M, Garrido-Sanz D, Sansegundo-Lobato P, Redondo-Nieto M, Conlon R, Martin M, Mali R, Liu X, Dowling DN, Rivilla R, Germaine KJ. 2021. Soil microbiome structure and function in ecopiles used to remediate petroleum-contaminated soil. Frontiers in Environmental Science, 9:624070. DOI: 10.3389/fenvs.2021.624070 

Durán D, Bernal P, Vazquez-Arias D, Blanco-Romero E, Garrido-Sanz D, Redondo-Nieto M, Rivilla R, Martín M. 2021. Pseudomonas fluorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiome. Scientific Reports, 11(1):57772. DOI: 10.1038/s41598-021-85218-1 

Guirado M, Garrido-Sanz D, Pindado O, Rodríguez-Rastrero M, Merino-Martín L, Sierra MJ, Escolano O, Rivilla R, Millán R. 2021. Effectiveness of biochar application and bioaugmentation techniques for the remediation of freshly and aged diesel-polluted soils. International Biodeterioration & Biodegradation, 163:105259. DOI: 10.1016/j.ibiod.2021.105259 

Lozano MJ, Redondo-Nieto M, Garrido-Sanz D, Mongiardini E, Quelas JI, Mengucci F, Dardis C, Lodeiro A, Althabegoiti MJ. 2021. Comparative analysis of three Bradyrhizobium diazoefficiens genomes show specific mutations acquired during selection for a higher motility phenotype and adaption to laboratory conditions. Microbiology Spectrum, 9(3):e00569-21. DOI: 10.1128/Spectrum.00569-21 

Garrido-Sanz D, Redondo-Nieto M, Guirado M, Pindado Jiménez O, Millán R, Martin M, Rivilla R. 2019. Metagenomic insights into the bacterial functions of a diesel-degrading consortium for the rhizoremediation of diesel-polluted soil. Genes, 10(6):456. DOI: 10.3390/genes10060456 

Garrido-Sanz D, Redondo-Nieto M, Mongiardini E, Blanco-Romero E, Durán D, Quelas JI, Martin M, Rivilla R, Lodeiro AR, Althabegoiti MJ. 2019. Phylogenomic analyses of Bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to Rhizobiales. Microorganisms, 7(2):50. DOI: 10.3390/microorganisms7020050 

Garrido-Sanz D, Arrebola E, Martínez-Granero F, García-Méndez S, Muriel C, Blanco-Romero E, Martín M, Rivilla R, Redondo-Nieto M. 2017. Classification of isolates from the Pseudomonas fluorescens complex into phylogenomic groups based in group-specific markers. Frontiers in Microbiology, 8:413. DOI: 10.3389/fmicb.2017.00413